YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30041945, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETGNLLCG DKQTAQTYRA VAGTGAGLSW SCHDALAAGL AERTGRHCLP DVKSEFCLGD  60
   61 AGCSKTVART GIAASLVWGG VHYWWHCDPR EYGVMCLIWG LFSVIIASVA QLSLGFAASH 120
  121 LPPMTHLWDF IAALLAFGLD ARILLLGLLG YLLSVFCWYK TLHKLALSKA YALLSMSYVL 180
  181 VWIASMVLPG WEGTFSLKAL LGVACIMSGL MLIFLPTTKQ RY

Type	Start	End	Confidence
Cytoplasmic	1	94	0.76
Transmembrane Helix	95	118	0.88
Non-Cytoplasmic	119	132	0.83
Transmembrane Helix	133	159	0.79
Cytoplasmic	160	169	0.76
Transmembrane Helix	170	188	0.94
Non-Cytoplasmic	189	194	0.78
Transmembrane Helix	195	217	0.89
Cytoplasmic	218	222	0.91