YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24113058, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPSQHAEQF QSQLANYVPQ FTPEFWPVWL IIAGVLLVGM WLVLGLHALL RARGVKKSAT  60
   61 DHGEKVYLYS KAVRLWHWSN ALLFVLLLAS GLINHFAMVG ATAVKSLVAV HEVCGFLLLA 120
  121 CWLGFVLINA VGDNGHHYRI RRQGWLERAA KQTRFYLFGI MQGEEHPFPA TTQSKFNPLQ 180
  181 QVAYVGVMYG LLPLLLLTGL LCLYPQAVGD VFPGVRYWLL QAHFALAFIS LFFIFGHLYL 240
  241 CTTGRTPHET FKSMVDGYHR H

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.98
Transmembrane Helix	26	50	0.88
Cytoplasmic	51	77	0.94
Transmembrane Helix	78	99	0.89
Non-Cytoplasmic	100	108	0.80
Transmembrane Helix	109	132	0.89
Cytoplasmic	133	181	0.97
Transmembrane Helix	182	204	0.89
Non-Cytoplasmic	205	219	0.82
Transmembrane Helix	220	241	0.92
Cytoplasmic	242	261	0.94