YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30041410, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTMSIKTIK YFSTIIVAIV AVLAGWWLWN YYMQSPWTRD GKIRAEQVSI TPQVSGRIVE  60
   61 LNIKDNQLVN AGELLLTIDK TPFQIAELNA QAQLAKAQSD LAKANNEANR RRHLSQNFIF 120
  121 AEELDTANLN VKAMQASVNA AQATLKQTQW QLAQTEIRAP VSGWVTNLTT RIGDYADTGK 180
  181 PLFALVDSHS FYVIGYFEET KLRHIREGAP AQITLYSDNK TLQGHVSSIG RAIYDQSVES 240
  241 DSSLIPDVKP NVPWVRLAQL VPVRFALDKV PGDVTLVSGT TCSIAVGQ

Type	Start	End	Confidence
Cytoplasmic	1	8	0.90
Transmembrane Helix	9	29	0.93
Non-Cytoplasmic	30	288	0.94