YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30041354, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNGWHEWPL VIFTVLGQCV VGALIVSGIG WFAAKNDADR QHIVRGMFFL WLLMGIGFIA  60
   61 SVMHLGSPLR AFNSLNRIGA SGLSNEIAAG SIFFAVGGLW WLVAVIGKMP QALGKLWLLV 120
  121 SMALGVIFVW MMTCVYQIDT VPTWHNGYTT LAFFLTVLLS GPILAAAILR AARVTFNTTP 180
  181 FAIISVLALI ACAEVIVLQG LSLASIHSSV QQASALVPDY ASLQVWRVVL LCAGLGCWLC 240
  241 PLIRRREPHV AGLVLGLILI LVGEMIGRVL FYGLHMTVGM AIAG

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.94
Transmembrane Helix	10	33	0.92
Cytoplasmic	34	46	0.83
Transmembrane Helix	47	66	0.94
Non-Cytoplasmic	67	86	0.86
Transmembrane Helix	87	105	0.95
Cytoplasmic	106	115	0.79
Transmembrane Helix	116	136	0.93
Non-Cytoplasmic	137	147	0.84
Transmembrane Helix	148	169	0.91
Cytoplasmic	170	180	0.74
Transmembrane Helix	181	203	0.89
Non-Cytoplasmic	204	222	0.91
Transmembrane Helix	223	242	0.95
Cytoplasmic	243	249	0.89
Transmembrane Helix	250	272	0.91
Non-Cytoplasmic	273	284	0.90