YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|195939730
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIALFLLTN LAVMVVFGLV LSLTGIQSSS VQGLMIMALL FGFGGSFVSL LMSKWMALRS  60
   61 VGGEVIEQPR NERERWLVNT VATQARQAGI AMPQVAIYHA PDINAFATGA RRDASLVAVS 120
  121 TGLLQNMSPD EAEAVIAHEI SHIANGDMVT MTLIQGVVNT FVIFISRILA QLAAGFMGGN 180
  181 RDEGEESNGN PLIYFAVATV LELVFGILAS IITMWFSRHR EFHADAGSAK LVGREKMIAA 240
  241 LQRLKTSYEP QEATSMMAFC INGKSKSLSE LFMTHPPLDK RIEALRTGEY LK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.83
Transmembrane Helix	7	26	0.96
Non-Cytoplasmic	27	32	0.80
Transmembrane Helix	33	53	0.92
Cytoplasmic	54	150	0.97
Transmembrane Helix	151	174	0.82
Non-Cytoplasmic	175	191	0.91
Transmembrane Helix	192	216	0.89
Cytoplasmic	217	292	0.99