YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30062499, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.83
Transmembrane Helix	19	38	0.91
Non-Cytoplasmic	39	42	0.73
Transmembrane Helix	43	59	0.80
Cytoplasmic	60	66	0.75
Transmembrane Helix	67	87	0.81
Non-Cytoplasmic	88	91	0.64
Transmembrane Helix	92	111	0.88
Cytoplasmic	112	116	0.75
Transmembrane Helix	117	136	0.92
Non-Cytoplasmic	137	143	0.74
Transmembrane Helix	144	165	0.91
Cytoplasmic	166	391	0.96
Transmembrane Helix	392	411	0.90
Non-Cytoplasmic	412	416	0.72
Transmembrane Helix	417	436	0.80
Cytoplasmic	437	444	0.73
Transmembrane Helix	445	464	0.87
Non-Cytoplasmic	465	484	0.57
Transmembrane Helix	485	506	0.86
Cytoplasmic	507	515	0.53
Transmembrane Helix	516	535	0.92
Non-Cytoplasmic	536	721	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFMLSPLLK RYTWNSAWLY YARIFIALCG TTAFPWWLGD VKLTIPLTLG MVAAALTDLD  60
   61 DRLAGRLRNL IITLFCFFIA SASVELLFPW PWLFAIGLTL STSGFILLGG LGQRYATIAF 120
  121 GALLIAIYTM LGTSLYEHWY QQPMYLLAGA VWYNVLTLIG HLLFPVRPLQ DNLARCYEQL 180
  181 ARYLELKSRM FDPDIEDESQ APLYDLALAN GQLMATLNQT KLSLLTRLRG DRGQRGTRRT 240
  241 LHYYFVAQDI HERASSSHIQ YQTLREHFRH SDVLFRFQRL MSMQGQACQQ LSRCILLRQS 300
  301 YQHDPHFERA FTHIDAALER IRDNGAPADL LKTLGFLLNN LRAIDAQLAT IESEQAQALP 360
  361 RNNDENELAD DSPHGLSDIW LRLSRHFTPE SALFRHAVRM SLVLCFGYAI IQITGMHHGY 420
  421 WILLTSLFVC QPNYNATRHR LKLRIIGTLV GIAIGIPVLW FVPSLEGQLV LLVITGVLFF 480
  481 AFRNVQYAHA TMFITLLVLL CFNLLGEGFE VALPRVIDTL IGCAIAWAAV SYIWPDWKFR 540
  541 NLPRMLERAT EANCRYLDAI LEQYHQGRDN RLAYRIARRD AHNRDAELAS VVSNMSSEPN 600
  601 VTPQIREAAF RLLCLNHTFT SYISALGAHR EQLTNPEILA FLDDAVCYVD DALHHQPADE 660
  661 ERVNQALAGL KQRMQQLEPR ADSKEPLVVQ QVGLLIALLP EIGRLQRQIT VPTSGRTGVF 720
  721 H