YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30062299, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLTLKESLV TRSRVFSPWT AFYFLQSLLI NLGLGYPFSL LYTAAFTAIL LLLWRTLPRV  60
   61 QKVLVGVSSL VAACYFPFAQ AYGAPNFNTL LALHSTNMEE STEILTIFPW YSYLVGLFIF 120
  121 ALGVIAIRRK KENEKARWNT FDSLCLVFSV ATFFVAPVQN LAWGGVFKLK DTGYPVFRFA 180
  181 KDVIVNNNEV IEEQERMAKL SGMKDTWTVT AVKPKYQTYV VVIGESARRD ALGAFGGHWD 240
  241 NTPFASSVNG LIFADYIAAS GSTQKSLGLT LNRVVDGKPQ FQDNFVTLAN RAGFQTWWFS 300
  301 NQGQIGEYDT AIASIAKRAD EVYFLKEGNF EADKNTKDEA LLDMTAQVLA QEHSQPQLIV 360
  361 LHLMGSHPQA CDRTQGKYET FVQSKETSCY LYTMTQTDDL LRKLYDQLRN SGSSFSLVYF 420
  421 SDHGLAFKER GKDVQYLAHD DKYQQNFQVP FMVISSGDKA HRVIKARRSA NDFLGFFSQW 480
  481 TGIKAKEINI KYPFISEKKA GPIYITNFQL QKVDYNHLGT DIFDPKP

Type	Start	End	Confidence
Cytoplasmic	1	14	0.55
Transmembrane Helix	15	30	0.67
Non-Cytoplasmic	31	33	0.49
Transmembrane Helix	34	54	0.86
Cytoplasmic	55	62	0.78
Transmembrane Helix	63	84	0.91
Non-Cytoplasmic	85	106	0.93
Transmembrane Helix	107	127	0.94
Cytoplasmic	128	137	0.93
Transmembrane Helix	138	158	0.84
Non-Cytoplasmic	159	527	0.91