YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30023407, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHEIPLVAMA IIIALSVHEF AHAYVAYKFG DDTAKRQGRL TLSPMAHLDL IGLIAVLILG  60
   61 FGWARPVPVN PYNFKRPRLA GILVSIAGPI SNLILSAIGL IIWYSLLKFG VLYSIPSAVA 120
  121 DTLAQFFQIF IMLNIVLLVF NLLPIPPLDG YRVVEDLAPA NIRAKMTQYE KYGAIALLIL 180
  181 VITPLSNYTI QPIFQVVIPH VFVFLDSIIA PIFGLL

Type	Start	End	Confidence
Cytoplasmic	1	5	0.66
Transmembrane Helix	6	26	0.70
Non-Cytoplasmic	27	44	0.86
Transmembrane Helix	45	67	0.86
Cytoplasmic	68	80	0.81
Transmembrane Helix	81	104	0.92
Non-Cytoplasmic	105	123	0.80
Transmembrane Helix	124	145	0.88
Cytoplasmic	146	171	0.82
Transmembrane Helix	172	190	0.84
Non-Cytoplasmic	191	195	0.68
Transmembrane Helix	196	215	0.80
Cytoplasmic	216	216	0.80