YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30022806, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKIKSTSKL ILISCITFFS LIGCLQKNII DDVQLIQGSV FDVAKDNKVK VTFVCPIQKK  60
   61 GNKVQVFEGS ANAVKQVKAD TSLESSQPFA SGQMRVALYT IRLAKTGMST SFDTLLRDVN 120
  121 IGNALYAALL DGNGTELLKG KYSTSYNVAI YIKKLLEHNM ETGPLPADNL HIGAFRYYQE 180
  181 GKDYYIPILK KHGDKIKITG IGLFKKDKYI GKIAEKDMFI FKGLLEKHKL DSHEFKTDSA 240
  241 YVMINNIRSV PTYDIKIKNG KPSFFINVRL DARIQELSKQ INLENNKNTK NIEKDVQKQL 300
  301 DKQAAKLIKQ LKSLGVDPLG LGAKYKQHYR PFKLEEWRQM YKDVPVHIKY TVNITNSGVI 360
  361 E

Type	Start	End	Confidence
Signal Peptide	1	26	0.88
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	361	0.99