YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228636459, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIIIISAT TIVIGITSFA YFGSKTPLHN EAKAVESQKH NNHKKEEIPA FPKADHNAKK  60
   61 IDNDFSVVTN PKSNLVLINK HRKLPDGYIP EDLTRPNVPF ISPKDKEKTL LRKDAAEALE 120
  121 NMFKAAKKEG LDLTAVSGYR SYKRQKSLHD TYVRRQGKAE ANSVSAIPGT SEHQTGLAMD 180
  181 ISSKSAKFQL EPIFGETAEG KWVAEHAHEF GFVIRYLEDK TDTTEYAYEP WHLRYVGNPY 240
  241 ATYLYKHHLT LEEAMEDKK

Type	Start	End	Confidence
Signal Peptide	1	20	0.88
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	259	0.99