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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|29897910, gi|...
Protein type: Transmembrane
Type Confidence: 0.70
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKQKQNKK KTHVPFRLNV LFFCVFLMFS AVIVRLGYVQ IVRGEEYKNE VEKKENSTIS  60
   61 NPVPRGKIFD RYGRAVVDNV AIRTITFTKM KGSTAEDRLE TAKKLADLIE VPTDKLTDRD 120
  121 KKDYWLAMHK EEAEEKITNK DRQEFKDKKI DDKELDERQR SRVTEEEVNQ LSAKDLEILA 180
  181 IKSKMDGGYA MTPQVIKKDA TEKEYSIISE NLAALPGVDT NVDWDRKYTY DDLFRSVLGG 240
  241 VSTSDEGLPR ERLDYYLVRD YNRNDRVGKS YLEQQYEDSL HGTKAEVRNV TDKNGNILET 300
  301 INVSKGQSGN DLNLTIDMEL QKRVEDILAK NLMRFKGSEP LLDRAFVVMM NPKNGEVLSM 360
  361 AGKQLVNEDG QTKVNDFALG TMTSSYPMGS TVKGATVLTG YQTGAIQPGS VQLDEPIKLK 420
  421 GTPTKSSWKT MGYINDLTAL KMSSNVHMFK TAMNIAGVQY VRGGTLHTPQ KAFDTMRYYF 480
  481 GQFGLGVKTG IDLPNESAGQ MGRSSQPGFL LDLSIGQYDT YTPLQLAQYI STIANGGYRM 540
  541 QPQVVKEIRQ PAVKPDEVGK VVQSMEPKVL NRVDMPESQI KRVQEGFRQV YNDSGGTATK 600
  601 YFTGAKYKAA GKTGTAQTVY GGDKEIGRKA NGERVETYNL TLVGYAPLED PEVAFSVVVP 660
  661 WVHDDKTGIN GYIGREIMDA YFDLKNKEVN GEAPKDDKDN KNKEQDDE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle