YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|29897561, gi|...
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKNMTKFHT NKGAGYFMIF FLLLFLLLLA RFFYIQSTGT VHNQDLDALA KQKHSKKGVL  60
   61 EANRGTIYDQ NGHVLAQDAN SYKMVAALKG ANSVENKEDT AKKIAGVLGK GEEDILASLN 120
  121 KEGRSQVEFG TLGKDLTKEK KEQIEALKLP GISFITENAR VYPNGDFASY VIGHAKPNEN 180
  181 GTSVGQFGIE KSLDKYLSAS NGEVAYTGDR KGVSLDGGKV NVKAPKNGDN AYLTIDQRVQ 240
  241 SYLEDAMKAA SKQYEPESLI GIVADPKTGK ILAMSTKPSY DPNDRQIKYF FNDAIANAFE 300
  301 PGSTMKIFTL AAAINEGVYK GQDYYQSGTY QVGNRKIKDH NGGAGWGSIT FDEGVERSSN 360
  361 VAFAILGDQK LGPERFRKYI HSFGLDEKTN IDLSGEGSNT ILFDQQIQQV TTAFGQGSTV 420
  421 TPIQLVQAAT AIANDGKMMK PYAIDKIVDP ITDKVKLEHK PEEVGKPVTK ETAAQVRQLL 480
  481 ERVVTSPKGT GTAYKIDGYS VGGKTGTAQI PDGKGGYMTG RQNYIFSFLG MAPMDDPQLV 540
  541 VYVAVKQPKL KDDENGAQPL ADIFKYVTKN SLEYLKIKPN EVKDPKKHLK EQQTTVPDVT 600
  601 GKTMAEAGKA IDKAKLRPII LGEGKVQQQV PKATEQTLKG DRVFLVGDKP TMPNIQGWAL 660
  661 RDVMNLAKTL QLNLKPSGTG YVTEQSVAEG TLLQPGTELG VTLVPPLEPQ QEAEKP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle