YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29897429, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLPNKITIS RIFLIPIFMV IMLAPFDWGS YKIGDVDLPI QHLVGALIFI IASATDWIDG  60
   61 HYARKYNLVT NLGKFLDPLA DKLLVSAALI TLVEMQYVPA WIVIVIISRE FAVTGLRLVL 120
  121 AGTGEVVAAN QLGKIKTWTQ IIAIAAYLLH DVPLNLIHIP VADIFIWIAL IFTVISGWDY 180
  181 FWKNRAAFVN SK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.96
Transmembrane Helix	7	29	0.86
Non-Cytoplasmic	30	37	0.87
Transmembrane Helix	38	58	0.87
Cytoplasmic	59	82	0.77
Transmembrane Helix	83	107	0.61
Non-Cytoplasmic	108	158	0.50
Transmembrane Helix	159	182	0.84
Cytoplasmic	183	192	0.91