YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29897377, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVFTPEEIT ELAANSGRKK AHLSLLPMLI LGFFGGAFIA LGYLLDIHVI GTMPKYWGSF  60
   61 TSFLGAAVFP IGLILVILAG GELVTGNMMT VSMAWLQKKI TLFHFIRNLV IVTFSNFIGA 120
  121 VFVAYFFGHI VGLTEGAFLA KTISIAQAKL QDTPLQAFIS AIGCNWLVCL AVWLSMGSKE 180
  181 FIGKIIGIWF PVMTFVAIGF QHVVANMFVI PAAIFAGHFT WAEYFPNFIF VFFGNLVGGM 240
  241 LFVALPYFIS YNKKLASYQE KTEMKNKSLS A

Type	Start	End	Confidence
Cytoplasmic	1	22	0.97
Transmembrane Helix	23	45	0.90
Non-Cytoplasmic	46	62	0.87
Transmembrane Helix	63	86	0.88
Cytoplasmic	87	104	0.87
Transmembrane Helix	105	128	0.90
Non-Cytoplasmic	129	154	0.93
Transmembrane Helix	155	176	0.92
Cytoplasmic	177	184	0.88
Transmembrane Helix	185	210	0.80
Non-Cytoplasmic	211	227	0.77
Transmembrane Helix	228	249	0.94
Cytoplasmic	250	271	0.95