YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30021812, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	299	0.51
Transmembrane Helix	300	321	0.90
Cytoplasmic	322	333	0.45
Transmembrane Helix	334	358	0.81
Non-Cytoplasmic	359	370	0.46
Transmembrane Helix	371	396	0.82
Cytoplasmic	397	413	0.46
Transmembrane Helix	414	434	0.91
Non-Cytoplasmic	435	447	0.44
Transmembrane Helix	448	475	0.74
Cytoplasmic	476	491	0.35
Transmembrane Helix	492	516	0.83
Non-Cytoplasmic	517	527	0.37
Transmembrane Helix	528	547	0.51
Cytoplasmic	548	553	0.65
Transmembrane Helix	554	576	0.87
Non-Cytoplasmic	577	592	0.74
Transmembrane Helix	593	613	0.95
Cytoplasmic	614	618	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITELLKRD TVIMDLTASN KEAVIDELVE KLNGANRLNS KTEFKEAILK REAQSTTGIG  60
   61 EGIAIPHAKT KAVKQPSICF GRSVSGINYE SLDGQPAHLF FMIAASEGAN NTHLETLSRL 120
  121 STLLMDEGFR KQLLEAKDES ELLQLFDEKE NEKEEEIEVA KPEGNEPYVL AVTACPTGIA 180
  181 HTYMAADSLK AKATELGIAI KVETNGSTGI KNGLTKEDIE RATAIIVAAD KQVEMNRFAG 240
  241 KHVIQVPVAD GIRKTENLLK RAVKQDAPIF KGVKEDGKSE SIEGEKGLGI YKHLMSGVSN 300
  301 MLPFVVGGGI LIALAFSFGG IKAEGPLAEL FMSIGGGKTG AFLFLVPILA GFIASSIADR 360
  361 PGFMPGVVGG FLAANANAGF LGGLIAGFLA GYVVLGLKRL FSGLPVQLEG IKPVLLYPVF 420
  421 GLLITGVVMQ KVVIPPVVAL NEMLTGWLNG LNGTNAILLG LILGGMMAID MGGPINKAAF 480
  481 TFGIAAIEAQ NFGVHSAVMA GGMVPPLAIA FATTFFKSKF TEAERKSGLT NYIMGASFIT 540
  541 EGAIPFAAAD PVRVIVSCVV GSSIAGALSM LFQITLPAPH GGLFVIALVN KPLLYIFSIL 600
  601 IGTIVSAVTL GVWKKKVQ