YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29897098, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.52
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKERVDNMKK NTLLKVGLCV GLLGTIQFVS TISSVQASQK VEKTVIKNET GTISISQLNK  60
   61 NVWVHTELGY FNGEAVPSNG LVLNTAKGLV LVDSSWDNKL TKELIEMVEK KFQKRRTDVI 120
  121 ITHAHADRIG GIKTLKERGI KAHSTALTAE LAKNSGYEEP LGDLQIITSL KFGNTKVETF 180
  181 YPGKGHTEDN IVVWLPQYQI LAGGCLVKSA EAKDLGNVAD AYVNEWSTSI ENVLKRYGNI 240
  241 NSVVPGHGEV GDKGLLLHTL DLLK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.50
Transmembrane Helix	12	31	0.49
Non-Cytoplasmic	32	264	0.98