YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228655809, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIENYLLFII MSICLIILPG PDTAMATKNT LVAGKVGGVK TVFGTCIALL IHTLAAVIGL  60
   61 SALIVKSALL FSIFKYVGAL YLIYIGIKAL LAVRNKENLD TNDLSLNNEN EHTSCFRQGF 120
  121 LTNLLNPKVA VFFLTFLPQF LNPNHNTFIQ LLVMGLTYLV LTVIWFAFYI FLIDKISAFM 180
  181 KKPKTQRYIQ GLTGVVLIGF GIKLAFEKNN

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.60
Transmembrane Helix	6	26	0.87
Cytoplasmic	27	40	0.55
Transmembrane Helix	41	64	0.85
Non-Cytoplasmic	65	67	0.45
Transmembrane Helix	68	91	0.71
Cytoplasmic	92	123	0.68
Transmembrane Helix	124	141	0.68
Non-Cytoplasmic	142	147	0.87
Transmembrane Helix	148	172	0.88
Cytoplasmic	173	187	0.88
Transmembrane Helix	188	206	0.88
Non-Cytoplasmic	207	210	0.83