YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30020187, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRGFFFMKF TNMRKLVLFV ITTVLATFFL ISLMVTSMKE TKSTYLYNWL NELSMNGYMY  60
   61 VLGKENHYFT QEYRNLNQDF SISSFLFSMA TNIRFNDVRS FVGKELPGFG KYDTEIVIAG 120
  121 EGTNYSNLPI ESSVPLEEVV KERTSGTGQA PKQDTNKEKK QPSQTTGKRQ VAFIYHTHSW 180
  181 ESYLPLLNLT NDPNPNKATS SVSNISILGD RFREQLEGEG IGATNDKSDV GQKLISKGLN 240
  241 SNSSYKMSRE IVQQAMAGNK DLQYFFDLHR DSARKNVTTK TIGDKSYAKL AFVVGKGNKN 300
  301 YEKNLQLATA LHEAINKKYP GVSRGVIQKG FQTGNGIYNQ DLSGQAILIE VGGVDNTEEE 360
  361 LNRSIDALAK AFGEYFWQAE KVNG

Type	Start	End	Confidence
Cytoplasmic	1	15	0.74
Transmembrane Helix	16	36	0.76
Non-Cytoplasmic	37	384	0.97