YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29895734, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.91
Transmembrane Helix	11	33	0.89
Non-Cytoplasmic	34	41	0.90
Transmembrane Helix	42	66	0.91
Cytoplasmic	67	76	0.94
Transmembrane Helix	77	99	0.90
Non-Cytoplasmic	100	122	0.87
Transmembrane Helix	123	142	0.95
Cytoplasmic	143	149	0.95
Transmembrane Helix	150	172	0.91
Non-Cytoplasmic	173	197	0.88
Transmembrane Helix	198	217	0.93
Cytoplasmic	218	230	0.84
Transmembrane Helix	231	251	0.94
Non-Cytoplasmic	252	283	0.93
Transmembrane Helix	284	309	0.88
Cytoplasmic	310	319	0.76
Transmembrane Helix	320	341	0.87
Non-Cytoplasmic	342	344	0.58
Transmembrane Helix	345	365	0.89
Cytoplasmic	366	372	0.83
Transmembrane Helix	373	393	0.91
Non-Cytoplasmic	394	413	0.90
Transmembrane Helix	414	432	0.96
Cytoplasmic	433	445	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGRLRPGDT VAIGLMLFAL FLGAGNLIFP PVLGQQAGEN VWIATIGFLV TGVGLPLLAV  60
   61 TAVAFVEGDL KALSSRVHPI FAFIFPLISY LAIGPFFAIP RTGAVSFEMG MKPFLSEAMV 120
  121 SEWYMLFLFT IVFFGITWYL SLNPSKLVDW FGKFLTPLLV LIVAVIVGKA IIDPIGEPAA 180
  181 PLAAYKENAF FGGFIQGYLT MDAISALVFG IVVVQVIRSK GIKESSQIAK ITVVSGIIAV 240
  241 LGLTLIYLSL AYLGSTSTSL GISENGGLIL TNVVNELYGT SGKILLGLVI ILACLTTSVG 300
  301 LTSACAGFFT NLFPKLSHKT IVTMVCVFSL IVSNLGLTQL IAVTLPVLMI IYPVAIVLIV 360
  361 LSYFHKWIGK RNTIYIGAIL GALLISFFNG LESAKIKIDA ISNVLQMLPL YNEGIGWLIP 420
  421 SCIGGILGFF FYKSNESSEL QKKGA