YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29895658, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMSSELEQN TRSNKKRSKR KSIKWFILIP FFLLIFGGVG YGSFIYNKAK AVVNDAYAKI  60
   61 EKSSKRDKEV EPLKDNISIL IMGVDGSEMR KSQYGEAVRT DALLLATINK DDKSVKLVSI 120
  121 PRDSRVYIPT RKKLDKITHA HVFGGVESTR DTVERFLNVP VDYYVKFNFE SFVQIVDSIG 180
  181 GIDIDVPVTF TEQDSKDQAG MIHLEKGYQH LNGEQALALA RTRKIDSDAM RGQRQQLVIE 240
  241 AIAKKAMSVQ SIIKMGSLLD AVDKNMKTNL TFDDMLAITK NMAGSNLEME KLQIEGTDKR 300
  301 IGGIYYYIPN EKNVKDISKK LNDHLGVTPK SVRNE

Type	Start	End	Confidence
Cytoplasmic	1	21	0.95
Transmembrane Helix	22	44	0.87
Non-Cytoplasmic	45	335	0.99