YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29895523, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.90
Transmembrane Helix	13	35	0.89
Non-Cytoplasmic	36	47	0.88
Transmembrane Helix	48	71	0.90
Cytoplasmic	72	83	0.90
Transmembrane Helix	84	106	0.90
Non-Cytoplasmic	107	126	0.93
Transmembrane Helix	127	148	0.90
Cytoplasmic	149	159	0.85
Transmembrane Helix	160	181	0.90
Non-Cytoplasmic	182	202	0.92
Transmembrane Helix	203	222	0.95
Cytoplasmic	223	234	0.89
Transmembrane Helix	235	256	0.89
Non-Cytoplasmic	257	289	0.90
Transmembrane Helix	290	315	0.85
Cytoplasmic	316	325	0.80
Transmembrane Helix	326	348	0.88
Non-Cytoplasmic	349	353	0.71
Transmembrane Helix	354	374	0.91
Cytoplasmic	375	382	0.81
Transmembrane Helix	383	402	0.93
Non-Cytoplasmic	403	419	0.89
Transmembrane Helix	420	441	0.90
Cytoplasmic	442	458	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGGYIMANK VPFSFIVVIG LMLFALFFGA GNLIFPAMLG QSAGENVWIA NAGFLVTGVG  60
   61 LPLLGVLAFG FSGKDDLQSL ASRAHPVFGI VFTTVLYLAI GPLFAIPRTG NVSYEIGLKP 120
  121 FMPEGVGSTP LILFTIIFFS ITCFFSLNPA KIVDIVGKIL TPIKLTFIGI LVIVAFIHPI 180
  181 GDMQAPVEAY TSHAFFKGFQ EGYLTMDTLA SFVFGIIIIN AIKEKGAKTK TQIMVVCAKA 240
  241 TIIAASILAI IYTALSYMGA SSVAKLGHLE NGGEVLAKVS NYYFGSYGGV LLGLMITVAC 300
  301 LTTSVGLVSA CSSFFHKLFP NVPYKAIAIT LCVFSAIVAN VGLTQLIAVS VPVLTAIYPL 360
  361 AIVLIFLTFF HSLFKGRAEV YQVSLIVTFI ISLFDGLSAA GVNIEVVSQV FTKFLPMQEV 420
  421 GLGWIFPAII GGFIGYGLSI LKVKNQVQPA TRADKKIG