YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29895162, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTMVNLVWV AMAVIGIVYA MINGTMEEVN KAVFDGAKDA VTICIGLISV LVFWLGLMKI  60
   61 AEEAGLLKKL VTLFMPIVKR LFPEIPKDHP SMGFILSNMM ANFFGLGNAA TPLGIKAMEQ 120
  121 LKELNGGKDS ASRSMVTFLA LNTSAITLIP TTVISIRMTY ESANPTEIVG VTFIAQVLSM 180
  181 IGAIWIDRYF YRRRSRKGRK K

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.53
Transmembrane Helix	7	26	0.92
Cytoplasmic	27	35	0.56
Transmembrane Helix	36	58	0.86
Non-Cytoplasmic	59	93	0.64
Transmembrane Helix	94	115	0.79
Cytoplasmic	116	134	0.92
Transmembrane Helix	135	156	0.91
Non-Cytoplasmic	157	167	0.83
Transmembrane Helix	168	191	0.87
Cytoplasmic	192	201	0.99