YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29895134, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	40	0.98
Non-Cytoplasmic	41	54	0.80
Transmembrane Helix	55	76	0.92
Cytoplasmic	77	87	0.81
Transmembrane Helix	88	110	0.86
Non-Cytoplasmic	111	131	0.89
Transmembrane Helix	132	153	0.92
Cytoplasmic	154	161	0.92
Transmembrane Helix	162	184	0.89
Non-Cytoplasmic	185	208	0.91
Transmembrane Helix	209	228	0.94
Cytoplasmic	229	245	0.79
Transmembrane Helix	246	266	0.88
Non-Cytoplasmic	267	291	0.88
Transmembrane Helix	292	316	0.87
Cytoplasmic	317	325	0.81
Transmembrane Helix	326	346	0.89
Non-Cytoplasmic	347	352	0.64
Transmembrane Helix	353	375	0.90
Cytoplasmic	376	383	0.76
Transmembrane Helix	384	402	0.93
Non-Cytoplasmic	403	424	0.85
Transmembrane Helix	425	445	0.91
Cytoplasmic	446	463	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLQMNEKGG KPMNTVSKKH IFFTGLMLFS LFFGAGNLIF PPMLGQNAGE NFWPAMIGFL  60
   61 LTGVGLPLLT VIAISLSGNG MQQLASHAHP LFGIFFTVVV YIAIGPSMGI PRVANVAYEM 120
  121 GVSSFLPETI RSSSLVLFVY TIIFFTIVFW LSLNPSKLVD RIGNVLTPIL LLSIFLLFVK 180
  181 SVFTPLGQSG PAMQEYQTSP IFKGFMEGYL TMDTISALAF GIIVVNAIRS KGVNDRKSIA 240
  241 IATAKAGLIA ATGLVLVYGA LGWLGATSVS LGYAKNGGQL LTVIVQQLFG PYGLLLLSLI 300
  301 VTLACLTTCV GLVSACSQYF STLLTTFSYK TFASIICALG LLVANLGLTK IIAISVPILL 360
  361 VVYPIAIVLV LLSLLHKYFG GYRSVYVGAL IGAAVVSVFD GLKQGGISVS FITPYFEFIP 420
  421 LYNEGIGWLI PALVGGLIGL ATARLSGTKK VPLVTESHEV KAS