YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228674416, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.53
Transmembrane Helix	21	41	0.93
Cytoplasmic	42	48	0.48
Transmembrane Helix	49	68	0.71
Non-Cytoplasmic	69	80	0.61
Transmembrane Helix	81	104	0.91
Cytoplasmic	105	134	0.73
Transmembrane Helix	135	155	0.92
Non-Cytoplasmic	156	194	0.77
Transmembrane Helix	195	218	0.90
Cytoplasmic	219	231	0.81
Transmembrane Helix	232	251	0.96
Non-Cytoplasmic	252	299	0.92
Transmembrane Helix	300	332	0.79
Cytoplasmic	333	349	0.95
Transmembrane Helix	350	373	0.90
Non-Cytoplasmic	374	378	0.85
Transmembrane Helix	379	400	0.79
Cytoplasmic	401	408	0.67
Transmembrane Helix	409	430	0.90
Non-Cytoplasmic	431	447	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVTKKQGLY NRLIRLNPPQ ILALGFFCLI VVGGLLLKLP FATKVHISWV DAFFTATSAA  60
   61 TVTGLGVVDT ASTFTMFGEI VIMFLIQTGG LGLMTIAILI VWVLGKKIGL RHRLLIGEAF 120
  121 NQTNIGGLVK LVKRVFIFSI CIELIGVIFL SFRFIPEFGF GKGLYYSIFH VIASYNNAGF 180
  181 ALWPDNLTRY VGDPIINIGI CSLIVIGGLG FTVLIDIWYS RSFRKLSLHS KIMIIGTVVL 240
  241 NVIAMIVIFV LEYNNVKTLG NLSLNEKLWA SFFQGITPRT AGFNTVDYGG MEESSILFTM 300
  301 ILMFIGAGSV STGGGIKLTT FVILITSVLS FFRKKEEIVL FQRTIKMSTV TRALAIAVAS 360
  361 QILILAAVFI LMLTENFSFI QLLFETISAF GTVGLTMGIT AKLSAFGKCI IMFVMFCGLI 420
  421 GPLTLVFSLA RPAKQKIKYP SEDVFTG