YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30019452, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTMVQKLWL TVVCAVCVTV SFLYFVSLYS YEKLYVDNLK ASLVMEGKSL AAQYDKREGI  60
   61 STFEEKVRSF DQISSSDVIF VSNPRDLSAC LPFDVHHHSL ISEGDRQTLL DGKTVTKIGY 120
  121 EEHFDRNIMG VVIPVLENKK LVGIVYSYIP LKSIKDLIYD MGLILAPLAI AMILITIWVG 180
  181 RKIIIAITKP LSQMERVANH LATGDFSERI TVSSEDEIGR LGKAFNKMAN SLETEDVKRK 240
  241 EFLANVSHEL RTPLSYIKGY SEAILDGVAK GPQQEKVTQL IHKEAGRMQR LVHDLLDLAQ 300
  301 LEGEHFPLKK QPIVFSQLIE DVLDTYEIKF IEKEIHISTN LNPEVIVMID EDRMQQVLHN 360
  361 VLDNAIRYTN QKGNIVITLE QIDDYCELKI KDTGIGIDIE HLENLGERFY RVDKARSRQH 420
  421 GGTGLGLAIV KQIVHIHGGQ WKIESEKDKG TTVIIKLNVQ DEGSMF

Type	Start	End	Confidence
Cytoplasmic	1	7	0.51
Transmembrane Helix	8	28	0.84
Non-Cytoplasmic	29	156	0.62
Transmembrane Helix	157	180	0.80
Cytoplasmic	181	466	0.55