YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218543402, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKGKLLALP TVAWLLIFFL IPLVFVLGFA FMQRGAYGTV EMQFTLENIS RVFDPLYLGT  60
   61 LWETVKIAVI TTVICLLIGY PFAYTITIVD RKYRSILLLL ATIPFWINFL VRSYAWIVIL 120
  121 RSQGLVNTLL LKLGIISEPL NLLYNTPSVI LGMVYSLLPF MILPVYAAIE QLDKRKLEAA 180
  181 YDLGATPIKA FWNITVPMTM SGIATGSILV FVSSIGMFVV SDVMGGSKVA LIGNVIQNQF 240
  241 LGARDWPFGS ALSIIVVLFS VLLIYLYYRA TKVYKYNENG GE

Type	Start	End	Confidence
Cytoplasmic	1	10	0.88
Transmembrane Helix	11	32	0.93
Non-Cytoplasmic	33	64	0.95
Transmembrane Helix	65	86	0.91
Cytoplasmic	87	95	0.82
Transmembrane Helix	96	118	0.89
Non-Cytoplasmic	119	148	0.91
Transmembrane Helix	149	169	0.93
Cytoplasmic	170	189	0.97
Transmembrane Helix	190	217	0.76
Non-Cytoplasmic	218	247	0.86
Transmembrane Helix	248	268	0.95
Cytoplasmic	269	282	0.95