YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29894855, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKIRTRKLF ICFCLAFVLF VPIHTFADEK REWKDEVIYS IMIDRFNNGE PKNDKQLEVG  60
   61 NLEGYQGGDI RGIIKRLDYI KEMGFTTVML SPLFESGKYD GLDVRNFKKV NEHFGTDNDV 120
  121 KELVKEAHAK GMKVVFQFPL GENERQVIDA MKWWIKEVDL DGSYVIHSEK KPRSFWDNAQ 180
  181 KDMQVIKKDF RIMTKEDSEY NEKIVESFSE ADVSVKSLYD VSKKEGEFVT FLDDQETKRY 240
  241 ARIAKENMYY PPSRLKLALT YLLTSPGIPN FYYGTEIALD GGSVPDNRRL MDFKSDEKFM 300
  301 QHITKLGELR QARPSLRRGT FELLYDKSGM SILKRKYKDE VTLVAINNTK ETQKVSLPAS 360
  361 AIGEKQELRG LLQDEIIREE NGKFYLVLKR EESNVYKVNG ETGVNWLFIS LIVGVNVLFI 420
  421 AFLIAVKRKR R

Type	Start	End	Confidence
Signal Peptide	1	27	0.99
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	402	0.99
Transmembrane Helix	403	426	0.90
Cytoplasmic	427	431	0.96