YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29894674, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVMSKNVDE AISRKEEKCI MSFIPNMITI ANFVCGLLAI YAVFVHDIYL GAVFIITGML  60
   61 FDFFDGMVAR KLDSVSEIGG ELDSFADLVT FGVAPSILAY SASLKDLQSI GMICALTYSI 120
  121 CGMLRLARFN TQQSKLPTFI GMPIPFAAMC LLILCFLKNP VSVAFGTCVL AYLMVSKIKF 180
  181 PHFKKDIAES LKPGRLD

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	42	0.94
Non-Cytoplasmic	43	47	0.78
Transmembrane Helix	48	68	0.88
Cytoplasmic	69	83	0.80
Transmembrane Helix	84	102	0.84
Non-Cytoplasmic	103	108	0.70
Transmembrane Helix	109	127	0.92
Cytoplasmic	128	135	0.82
Transmembrane Helix	136	157	0.89
Non-Cytoplasmic	158	161	0.76
Transmembrane Helix	162	180	0.75
Cytoplasmic	181	197	0.78