YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29894510, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.58
Transmembrane Helix	32	54	0.85
Cytoplasmic	55	69	0.57
Transmembrane Helix	70	92	0.84
Non-Cytoplasmic	93	99	0.49
Transmembrane Helix	100	120	0.80
Cytoplasmic	121	132	0.69
Transmembrane Helix	133	158	0.82
Non-Cytoplasmic	159	180	0.68
Transmembrane Helix	181	200	0.91
Cytoplasmic	201	220	0.71
Transmembrane Helix	221	244	0.86
Non-Cytoplasmic	245	287	0.82
Transmembrane Helix	288	308	0.95
Cytoplasmic	309	319	0.80
Transmembrane Helix	320	341	0.64
Non-Cytoplasmic	342	343	0.40
Transmembrane Helix	344	378	0.71
Cytoplasmic	379	391	0.44
Transmembrane Helix	392	415	0.86
Non-Cytoplasmic	416	437	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNGFMSFME QKIMPTTQKI AGQRHLLAIR NGVISTLPLT IVGSFFVIFL NLPIDAYMEW  60
   61 IAPFRHILDI PFRFTVGLMA LYAAFGVGAS LANFYQLNQL SAGLLSVLAF LLASVEPIQI 120
  121 TKAVPGVIDA GRYISVGTLS ATSLFGAIVT ALIAVEIYHF MIKHNISIKL PDSVPPAVSN 180
  181 SFAALIPTLA VILLFWGIRY GLKFDVNTTI TYLIAPLKSV LVGNNLFGGL LTVFLIVFFW 240
  241 SFGIHGPAIL GPIIRPMWDS AILENMEVFT ATGNAHQLPN LFTEQFIQWF VWIGGSGSTL 300
  301 ALVIMFMFSK SKFLKELGRL SFVPGLFNIN EPIIFGAPIV MNPILIIPFV ITPLVTTTVS 360
  361 YFAVVSGMIP LMMAKLPFTM LAPIAAVIST DWTIMAGVLV LVNFVISFVI YYPFFKMYEK 420
  421 QQLAGEEKTE CSEQLSS