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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|30018656, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNWYSKTKD QTLIDLETNE QNGLTDEIVS ERLKQYGSNE LATKQKRTLW QRIFAQINDV  60
   61 LVYVLIIAAL ISAFVGEWAD ASIIALVVVL NAVIGVVQES KAEQALEALK KMATPKAIVK 120
  121 RNGELKEIPS EHVVPGDIVM LDAGRYIPCD LRLIETANLK VEESALTGES VPVDKDAIYH 180
  181 PSMRSDEQVP LGDQKNMAFM STLVTYGRGV GVAVETGMNS QIGKIATLLH EADDDMTPLQ 240
  241 KSLAQVGKYL GFVAVAICIV MFLIGFLQGR DTLEMFMTAI SLAVAAIPEG LPAIVSIVLA 300
  301 IGVQRMIKQN VIIRKLPAVE ALGSVTIICS DKTGTLTQNK MTVTHFYSDN TYDRLESLNV 360
  361 NNDAQRLLLE NMVLCNDASY NNESQTGDPT EIALLVAGTT FNMQKDHLEK IHERVNEVPF 420
  421 DSDRKMMSTV HMYNESYYSM TKGAIDKLLP RCTHIFKNGK IEILTDSDKN QILEAAGSMS 480
  481 QEALRVLSFA FKQYDSNDVD INHLEENLIF IGLVGMIDPP RTEVKDSIKE CKKAGIRTVM 540
  541 ITGDHKDTAF AIAKELGIAE EISEIMIGTE LDNVSDTELA SKINHLNVFA RVSPEHKVKI 600
  601 VKALRAKGNI VSMTGDGVND APSLKQADVG VAMGITGTDV AKGAADVVLT DDNFSSIVKA 660
  661 VEEGRNIYRN IKKSILFLLS CNFGEIIALF LAILLGWATP LRPIHILWVN LITDTLPALS 720
  721 LGVDPEDPDV MKEKPRHAKE SLFSGSVPFL IFNGVIIGLL TLIAFIAGAK FYTGDTNLFP 780
  781 LFPERIDDDA LLHAQTMAFV VLSFSQLVHS FNLRSRTKSI FSIGIFTNKY LVFSLLIGVL 840
  841 MQVCIISIPP LANIFGVHAL TMRDWGFVLL LSIIPLVVNE IIKLVKKN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle