YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29655281, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPPFNALLF FAMPNSQLDP EWTTAPNHHI LTLDHPSYPT LLKEIPDPPK KLYIMGDPLI  60
   61 LNQPQFAIVG SRNPTVTGCE IAQEMAEKLV QAGFHITSGL ALGIDAASHR GALKAGGQTI 120
  121 AVLGSGLTNI YPPRHHRLAE QISQKGALVS EFPLTMPPLP TNFPRRNRII IGLSLGTLVV 180
  181 EATLGSGSLI TAKLAAEQNR EVFAIPGSIR NPLSQGCHAL IKEGAKLVDS IGDIIAELSY 240
  241 EATGASAPIQ ALDKNEHKLL ECIGFEVTSI DQLIARSGFS ASIVASLLLR IELQGYIKSR 300
  301 PGGVIRVK

Type	Start	End	Confidence
Signal Peptide	1	18	0.56
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	308	0.84