YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29542512, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.89
Transmembrane Helix	5	23	0.85
Cytoplasmic	24	31	0.86
Transmembrane Helix	32	51	0.97
Non-Cytoplasmic	52	57	0.86
Transmembrane Helix	58	78	0.93
Cytoplasmic	79	89	0.83
Transmembrane Helix	90	110	0.90
Non-Cytoplasmic	111	118	0.79
Transmembrane Helix	119	141	0.91
Cytoplasmic	142	152	0.89
Transmembrane Helix	153	176	0.89
Non-Cytoplasmic	177	182	0.81
Transmembrane Helix	183	203	0.85
Cytoplasmic	204	208	0.61
Transmembrane Helix	209	229	0.77
Non-Cytoplasmic	230	232	0.59
Transmembrane Helix	233	256	0.81
Cytoplasmic	257	456	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGFIHLSYF LAAILFLLGL KKMSHPRTAR PGIVWAGVGM LLAVLVTFLL IKNNLDLTNF  60
   61 ILIISAMVIG TVLAWVSGKR VAMTAMPQMI ALYNGMGGGA AAAIAASETL SSSHHLLNLT 120
  121 LALIGGLIGM IAFSGSLIAF AKLQGIIRKT ITLPLHNIIM AIFGLIILGL LGVLLFYSEQ 180
  181 QALLAVYFGL LFLYGIFMTL PIGGANMPVV ISLFNAMTGL AVAFEGFVLA NPLMMVAGII 240
  241 VGASGTLLTL LMAKAINQSV TAILFTPHHD GPITTQGIEG TLKPINATDA GVMLAYAQKI 300
  301 IIVPGYGMAV AQAQNKIWEL AKLLMERQIQ VKFAIHPVAG RMPGHMNVLL AEAGVPYDFV 360
  361 FTMDEINEEF AATDVAMVIG ANDIVNPIAS QSKESPLYGL PVLHVERAKN VIVIKRGQGR 420
  421 GFSGVENSLF YMDHTRMLYG NAQPVISELI QAVKQY