YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29654947, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLSVYIIA YNQITKIEAA IKSVLWADEV VVVDSHSTDG TTELAEKLGA RVVQVPFRGF  60
   61 GDLRNQAVAA CQYDWIFSLD SDERCTPAAR DEILSIINSN DALDIYKIPR KNRFMGRWIK 120
  121 HGGWYPDYRQ PQLFRKNALT YVPDVVHENY RCHSNKPMGY LKNPIWQIPF EDLSEMMHKA 180
  181 NRYSTLGVDR LKKKYGKASM FRAITHMSWT FIKVYIVKFG FLDGWPGLVI AMGHSYGAFY 240
  241 RYAKFYEQER CQRI

Type	Start	End	Confidence
Cytoplasmic	1	199	0.65
Transmembrane Helix	200	217	0.47
Non-Cytoplasmic	218	254	0.54