YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29542185, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIENQKTIG DDEYQYPNEE YVAETTPPDE QQPAEPKPAN FFVRFVQNNK RITAVIAVVL  60
   61 IVLVAFKLMS SHRSKSIDAP PPPAQPVAQQ PVQSVSAPDP EMMSKLDALK QDEQSSQTTI 120
  121 SQLQNQLQDV RNQLNQTSVQ QSQLNQAIAA LVDQMKQLGQ SIQSEETKKS APAKKSAPTA 180
  181 PPVVFHLKAI VPGRAWIISN DGLSESVSVG DPVPQYGTVK VVDANRGMVL MSSGKVIGYG 240
  241 ANDR

Type	Start	End	Confidence
Cytoplasmic	1	51	0.68
Transmembrane Helix	52	70	0.81
Non-Cytoplasmic	71	244	0.83