YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29542150, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.75
Transmembrane Helix	5	22	0.78
Cytoplasmic	23	30	0.76
Transmembrane Helix	31	52	0.93
Non-Cytoplasmic	53	70	0.95
Transmembrane Helix	71	93	0.87
Cytoplasmic	94	99	0.93
Transmembrane Helix	100	123	0.90
Non-Cytoplasmic	124	129	0.87
Transmembrane Helix	130	154	0.75
Cytoplasmic	155	170	0.71
Transmembrane Helix	171	190	0.80
Non-Cytoplasmic	191	202	0.57
Transmembrane Helix	203	223	0.90
Cytoplasmic	224	231	0.55
Transmembrane Helix	232	251	0.68
Non-Cytoplasmic	252	253	0.43
Transmembrane Helix	254	272	0.86
Cytoplasmic	273	292	0.78
Transmembrane Helix	293	313	0.82
Non-Cytoplasmic	314	317	0.75
Transmembrane Helix	318	338	0.90
Cytoplasmic	339	353	0.85
Transmembrane Helix	354	376	0.90
Non-Cytoplasmic	377	383	0.85
Transmembrane Helix	384	404	0.94
Cytoplasmic	405	417	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIYTLGSIV LTFAVLIAYV NHRFIRMQST IAIMSASLLL SAIFIIFHHF HIANIGQLTE  60
   61 NVIENIDFPD LLLKGLLNFL LFAGALTIDF NMLKAQKWEI GMLASLSTIV STVLIAFILY 120
  121 YFLQFLHLDL PFLYCLLFGA LISPTDPIAV LATFKQLGAP ERLTACVAGE SLFNDGVGIV 180
  181 LFITFYALTV NHIPATIEKI SLLFLRQAVG GIIYGLLLGF ITTQLLKSVK DYSLSILLTL 240
  241 AAVTGGYQLA LALGISGPLA MVITGIMVGA YIRRDQDETH KKKTKALETF WEVIDEVLNA 300
  301 ILFLLIGFEL LAIKASTLQI VAILLTIPLV LLVRLITVSI PIKFIQLKRN HNPYIISILT 360
  361 WGGLRGGLAV ALALSLPFNE YRNFILGMTY GVVIFSIIVQ GLTIKPLTRL ARRSHEG