YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29654879, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.72
Transmembrane Helix	5	23	0.92
Cytoplasmic	24	31	0.63
Transmembrane Helix	32	56	0.83
Non-Cytoplasmic	57	75	0.72
Transmembrane Helix	76	97	0.90
Cytoplasmic	98	105	0.72
Transmembrane Helix	106	126	0.83
Non-Cytoplasmic	127	129	0.63
Transmembrane Helix	130	149	0.79
Cytoplasmic	150	162	0.79
Transmembrane Helix	163	184	0.94
Non-Cytoplasmic	185	204	0.80
Transmembrane Helix	205	224	0.89
Cytoplasmic	225	239	0.77
Transmembrane Helix	240	260	0.86
Non-Cytoplasmic	261	267	0.82
Transmembrane Helix	268	290	0.93
Cytoplasmic	291	296	0.93
Transmembrane Helix	297	316	0.94
Non-Cytoplasmic	317	323	0.66
Transmembrane Helix	324	344	0.89
Cytoplasmic	345	364	0.89
Transmembrane Helix	365	386	0.91
Non-Cytoplasmic	387	405	0.85
Transmembrane Helix	406	428	0.94
Cytoplasmic	429	447	0.89
Transmembrane Helix	448	468	0.94
Non-Cytoplasmic	469	492	0.88
Transmembrane Helix	493	514	0.93
Cytoplasmic	515	560	0.98
Transmembrane Helix	561	581	0.91
Non-Cytoplasmic	582	590	0.74
Transmembrane Helix	591	611	0.89
Cytoplasmic	612	618	0.73
Transmembrane Helix	619	639	0.94
Non-Cytoplasmic	640	645	0.81
Transmembrane Helix	646	665	0.94
Cytoplasmic	666	681	0.91
Transmembrane Helix	682	703	0.93
Non-Cytoplasmic	704	740	0.93
Transmembrane Helix	741	759	0.95
Cytoplasmic	760	768	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTGIVIITL LVSALVPIVV HYLKGPRLGW GLALIPFLLF IYFIHLIPTI MHGGTIYSGF  60
   61 RWFPDLNINF SFYVDGLSLL FGLLITGIGI PIVIYSAPYL ENHPHLTRYY GYLFLFMASM 120
  121 LGLVLANNLI VLFVFWELTS ISSFLLIGLE HERPAARKAA VQALFVTVIG GLSLLASFIL 180
  181 IGIVTHTYSV AQLLSQGNLL QNQPLFVPIL LLMLIGAFTK SAQFPFHFWL PNAMEAPTPV 240
  241 SAYLHSATMV QVGIYLLARF HPLMSHNYWW FVILTTIGGI TMLAGVLLAV RQTDMKLILA 300
  301 YTTITALGSL VFLLGSTHDL IIKAAVAFLL AHALYKATLF MAVGDIKHQT GTRDIGKVRG 360
  361 LHKAMPITFM AVLVAGASMA GLPPLLGFYV KELVYGASLV APLASHILTI IAVFSNMIMA 420
  421 MLAFLLVLRP FWGEQKPKRV REANVNMSVN ALLLASLTLL LSIFPFVINH TVLSPAVSAI 480
  481 LRRPLKTKLT LWHGFTPSLV LSLITLLGAI VLYLKRAEFR WILARFDSVY RHGPAWLYDR 540
  541 FMHYLLRVAE WQTEILQNGK LRLYLITTFA TIALTLGDVL VRNHLIMVKQ WGFSFSFLPL 600
  601 FLATWLLISA YMTIWVRSYL IGLVFLGLFG IGAALFFIVN AAPDVAMTQA LIETLIVIIV 660
  661 VLNLYRQPPL PKIVDEKTYS RIINAVIALG IGFSVAVLLI AITQQPFDDF IGQYFITHSI 720
  721 PSGHGRNVVN VVLIDFRGFD TLGEIIVVAV AALGIYGLLK SRFRRSGP