YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29654876, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.88
Transmembrane Helix	6	25	0.96
Cytoplasmic	26	31	0.91
Transmembrane Helix	32	52	0.92
Non-Cytoplasmic	53	71	0.80
Transmembrane Helix	72	97	0.89
Cytoplasmic	98	106	0.90
Transmembrane Helix	107	126	0.94
Non-Cytoplasmic	127	132	0.78
Transmembrane Helix	133	151	0.94
Cytoplasmic	152	161	0.85
Transmembrane Helix	162	184	0.91
Non-Cytoplasmic	185	201	0.83
Transmembrane Helix	202	223	0.87
Cytoplasmic	224	234	0.59
Transmembrane Helix	235	257	0.78
Non-Cytoplasmic	258	268	0.79
Transmembrane Helix	269	290	0.93
Cytoplasmic	291	297	0.82
Transmembrane Helix	298	321	0.73
Non-Cytoplasmic	322	327	0.49
Transmembrane Helix	328	347	0.69
Cytoplasmic	348	366	0.54
Transmembrane Helix	367	388	0.88
Non-Cytoplasmic	389	403	0.58
Transmembrane Helix	404	425	0.88
Cytoplasmic	426	449	0.62
Transmembrane Helix	450	474	0.86
Non-Cytoplasmic	475	499	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLPILPLL ICLITAILCC FFWSFERLQK ICHLTGAIVL LMAVIVIFIF VTQKGILVMQ  60
   61 MGDYLAPFGI SIVIDLLSAI MLVVTGLIAL CVAIYALSDI KSTQQNLGFY PVYWILLVGI 120
  121 CGAFSTGDMF NLYVWFEVML IASFVLMALG NERIQLDGAI KYVAMNLIAT ILMLTAIAML 180
  181 YGIVGTLNMA DLSVRLSHYP NASIVMAVAL LLAIAFSIKT ALFPLFFWLP ASYHTTSVSA 240
  241 SAIFAGMLTK VGVYTLIRLV TLIVPNNQII LGLLLASSGL TMLTGVLGAA SQYNFRRILS 300
  301 FHIISQIGYM VMGLSIRTPL ALAGAVFYIV HHIIVKTNLF LISGITNRLG KSFDIRALSG 360
  361 FYRQSPLLAI LFFIPAFSLA GFPPLSGFWA KLSLLQAAFT NHNYIIAAIA LIVSFLTLYS 420
  421 MIKIWNQVFW TDKSQSKKED HALLSTGEKF SLFVPVILLV SITLAIAFFP QLFFQVMSKA 480
  481 SSQLLDSSQY VRAVLGDRQ