YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29542029, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLIFKRSS MPGLRTLIYM GLAIALIVLD QKALFFQKIR ADLALVVLPL QYLVSVPIKT  60
   61 IHWIAINVTT QQELVADNAR LRAHELLLES KLQKLLALER ENAQLRTLLK STAHVGGARV 120
  121 AVAQLLAVNL DPNLQQIIVD KGMRNHIYVG QPVLDAYGVV GQVIHAGLLT SKVMLISDPK 180
  181 SAVPVQDYRN GIRALALGMG SSGKLLLINV PDTSDIQKGD LFVSSGLGLR YPVGYPVGVV 240
  241 TELERDPTKR FATITLQPSA HLDQSQQVLM TWPNKASLAQ DVHQELNLKE KE

Type	Start	End	Confidence
Cytoplasmic	1	11	0.79
Transmembrane Helix	12	30	0.79
Non-Cytoplasmic	31	292	0.86