YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29654730, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPIYEVTFF IFAAVLIAAA AMVIISRNPV HAVLFLVLAF FASAVLWMMM QAEFLALVLI  60
   61 FVYVGAVMTL FLFVVMMLNI DLSDLQQKFV RFLPFGLIAM ALLIGMMVVI VSPRHFTVAT 120
  121 AHLPHVASNF SNVKAMGSLL YVDYFYPFEI AAVILLVAII AAITLAFHGR KPNTKSQRVR 180
  181 EQLEAKKENR LRVIKMKTEN S

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.86
Transmembrane Helix	7	25	0.96
Cytoplasmic	26	31	0.77
Transmembrane Helix	32	50	0.94
Non-Cytoplasmic	51	56	0.73
Transmembrane Helix	57	80	0.89
Cytoplasmic	81	91	0.81
Transmembrane Helix	92	112	0.93
Non-Cytoplasmic	113	145	0.92
Transmembrane Helix	146	168	0.92
Cytoplasmic	169	201	0.97