YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29541946, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.90
Transmembrane Helix	8	27	0.92
Non-Cytoplasmic	28	31	0.77
Transmembrane Helix	32	50	0.93
Cytoplasmic	51	57	0.82
Transmembrane Helix	58	78	0.89
Non-Cytoplasmic	79	84	0.61
Transmembrane Helix	85	103	0.93
Cytoplasmic	104	111	0.72
Transmembrane Helix	112	132	0.91
Non-Cytoplasmic	133	139	0.84
Transmembrane Helix	140	160	0.93
Cytoplasmic	161	179	0.86
Transmembrane Helix	180	200	0.95
Non-Cytoplasmic	201	207	0.71
Transmembrane Helix	208	227	0.95
Cytoplasmic	228	248	0.91
Transmembrane Helix	249	270	0.73
Non-Cytoplasmic	271	272	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNNMLKYRV LTALILFFFV LLAIWFLPMP WFAILIGAIM IWAAWEWSAL AGIKNKYWRG  60
   61 FYVILLGITL FAAYYLPIFW VLIASVILWL WAAVAIFCYA IYIAPLGFQY PAVKLIVGFF 120
  121 ALISCWLAIN ALREDIGGPG WLLFGLMLVW SMDTGAYAAG RLWGKHTLIA RVSPKKTWEG 180
  181 LGGGIILSLL IAVIGGILFH LPFSQLSLVI LLALITVFFA VIGDLFESML KRQAGVKDSG 240
  241 RLLPGHGGIL DRVDSLIVAL PIFTLGSLLI SG