YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29541829, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.43
Transmembrane Helix	6	21	0.59
Cytoplasmic	22	25	0.66
Transmembrane Helix	26	46	0.81
Non-Cytoplasmic	47	53	0.80
Transmembrane Helix	54	73	0.94
Cytoplasmic	74	84	0.90
Transmembrane Helix	85	106	0.94
Non-Cytoplasmic	107	112	0.80
Transmembrane Helix	113	134	0.75
Cytoplasmic	135	154	0.70
Transmembrane Helix	155	176	0.80
Non-Cytoplasmic	177	181	0.54
Transmembrane Helix	182	204	0.81
Cytoplasmic	205	212	0.54
Transmembrane Helix	213	231	0.55
Non-Cytoplasmic	232	233	0.44
Transmembrane Helix	234	249	0.84
Cytoplasmic	250	266	0.91
Transmembrane Helix	267	288	0.89
Non-Cytoplasmic	289	301	0.82
Transmembrane Helix	302	328	0.82
Cytoplasmic	329	349	0.90
Transmembrane Helix	350	373	0.85
Non-Cytoplasmic	374	383	0.89
Transmembrane Helix	384	406	0.91
Cytoplasmic	407	532	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAFEIIPFI LFLVVIGTAI AERINVPYPL VLVVTGLIVG FIPGIPNWHP PSDLVLPLFL  60
   61 PPILFAAARL ISWEDIQNNK SEISSLSILL VIASTIVIGV ILAWIVPGMP LSASLVLGAI 120
  121 ISPTDAIAST SILNRMRIPK HIIRSLEVES LFNDAVSIVL YNMGLMFVFM GAINLLHAGE 180
  181 SMLIVGLGGI AVGLMFSYFT SLIVKEFLTE SENELPIIMS VILAYVSYLF ADRIGVSGVL 240
  241 AVVAAGLFHK RTEKTIKART RLSEKSVWDT LIFFLNGLIF IVIGMQFPNF LGKVNYLPIG 300
  301 QLILFSTITV LSLILLRFIW VLATNLLVNS LSRLRKHPTK RYVFSWREVL ISSWSGMRGL 360
  361 VSLALALALP IMLPDTTPFP YRDLIIFLTI IAILFTLLVQ GLTLPYLVKL LKSEKSDAAF 420
  421 IKESSKIYRR LTKEAIQHID QLDAGEHICS ENAKKLVNNY YANRLLQFKV TYETECDTHE 480
  481 VGHEAEALLS KILNYERNRL HEMRSHGEVS EEVYIRILSK IDRDEVGFAS YK