YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29541716, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.61
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRYPLWRYI LLAVLIIISL IYALPNLYGE DPAIQISAKN SAPIEAVEEK IKSTLNAQHI  60
   61 SYLSVRPVDN TVLVRFPSTE DQLKAQDVIQ AVVGTDYSVA LNLAPRTPRW LQAIGAKPMR 120
  121 LGLDLRGGIH FLLDVDVGAM VKAQETGDLH TMSTALREAR IRYTEMSSDQ NGVMIHFRDQ 180
  181 AARDQARTLL EKQFPDYRFE ATASSLRGTI SITALHQIQQ NAVDQITTIL RNRVNELGVA 240
  241 EPVIQQQGES QISVDLPGIQ DTARAKDIIG KVATIRLQLV DVEHDAETAS STGTVPFGSK 300
  301 LYTFEKQLVL LKQQVVLKGT SIINASSVIG EDGRPAVRVR VSGSDVPSFN RITGENVGKP 360
  361 LAVVYVETQT TRHLVDGKVV TQHRQIERII NIATIQTALG NDFQITNLST MDYAKNLALL 420
  421 LRSGAYPVPV DFVQERVVGP SLGQENIHMG VLSTEIGALL VIVFMAFYYR LFGVIADIAL 480
  481 ALNIVFIVAV LSILGATLTL PGIAGIVLTV GMAVDANVLI NERIREELRN GMSPQASIKA 540
  541 GYDRAFATIV DANVTTLIVM IILFALGSGP VQGFAVTTTI GLLSSMVTAI FFTRAVVNLV 600
  601 YGRRRASRLS IGINAKSAEA KK

Type	Start	End	Confidence
Signal Peptide	1	23	0.61
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	446	0.99
Transmembrane Helix	447	469	0.89
Cytoplasmic	470	477	0.64
Transmembrane Helix	478	496	0.92
Non-Cytoplasmic	497	501	0.66
Transmembrane Helix	502	521	0.92
Cytoplasmic	522	544	0.89
Transmembrane Helix	545	566	0.91
Non-Cytoplasmic	567	574	0.75
Transmembrane Helix	575	598	0.88
Cytoplasmic	599	622	0.94