YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29541715, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFFKTNTKI PFMRQRKWAG IFSAIIFLAS IITLAVNGLN LGLDFTGGTQ VEVNFTKPVD  60
   61 TNQIRKNLAE AGFPQAVVRV YDVRHISVRV APHKELTQEE LKEKLMSAMP GGHIGSLDYI 120
  121 GPQVGKQLMT NGILAVIVAL IATMIYIALR FEMRFALSAA IALIHDPVLI LGIFSFFHIE 180
  181 FNLIVLAAVL TVIGYSLNDT IVVYDRIREN FRKVRRGTPT EIVDLSINQT LSRTIMTSGL 240
  241 TLIVVLALFI FGGSTLRPFA LALIIGIVIG TYSSIYVAGS LAVTFGLSRR HLIRSPKKIE 300
  301 DDLP

Type	Start	End	Confidence
Cytoplasmic	1	17	0.98
Transmembrane Helix	18	39	0.92
Non-Cytoplasmic	40	127	0.98
Transmembrane Helix	128	149	0.92
Cytoplasmic	150	154	0.92
Transmembrane Helix	155	177	0.89
Non-Cytoplasmic	178	182	0.79
Transmembrane Helix	183	204	0.91
Cytoplasmic	205	234	0.90
Transmembrane Helix	235	254	0.91
Non-Cytoplasmic	255	261	0.68
Transmembrane Helix	262	287	0.89
Cytoplasmic	288	304	0.96