YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29541616, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.87
Transmembrane Helix	21	42	0.96
Cytoplasmic	43	61	0.88
Transmembrane Helix	62	83	0.87
Non-Cytoplasmic	84	106	0.91
Transmembrane Helix	107	132	0.86
Cytoplasmic	133	148	0.88
Transmembrane Helix	149	172	0.89
Non-Cytoplasmic	173	195	0.88
Transmembrane Helix	196	217	0.94
Cytoplasmic	218	232	0.89
Transmembrane Helix	233	258	0.89
Non-Cytoplasmic	259	284	0.88
Transmembrane Helix	285	307	0.82
Cytoplasmic	308	315	0.81
Transmembrane Helix	316	340	0.87
Non-Cytoplasmic	341	350	0.86
Transmembrane Helix	351	371	0.93
Cytoplasmic	372	385	0.86
Transmembrane Helix	386	408	0.93
Non-Cytoplasmic	409	422	0.88
Transmembrane Helix	423	445	0.92
Cytoplasmic	446	460	0.87
Transmembrane Helix	461	481	0.93
Non-Cytoplasmic	482	499	0.86
Transmembrane Helix	500	522	0.92
Cytoplasmic	523	599	0.96
Transmembrane Helix	600	619	0.88
Non-Cytoplasmic	620	622	0.59
Transmembrane Helix	623	642	0.78
Cytoplasmic	643	668	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEKLIFGKL TLDAIPLHTP IIMGAGVFMA VILVAVLVAI TITKKWSYIW HEWITSVDHK  60
   61 KIGIMYVLLA GVMLLRGFSD VILMRSQQAI AAGANMGYLP AQHYDQIFTA HGVIMIFFVA 120
  121 MPLVFGLANI ALPLQIGARD VAYPYLNSFS FWMTFVGAML CNVSLVIGDF AATGWLAYPP 180
  181 LSELYYSPTV GVDYFIWALQ IAGVGSLLGG INFIATVVKM RCPGMTFMRM PIFVWTTFCS 240
  241 MILIALAFPI LTVSLALLTL DRLLGMHFFT QYAGGNMMMY INLIWAWGHP EVYILILPAF 300
  301 GVFSEVVATF SQKKLFGYVT MVYATFAITF LSFIVWLHHF FTMGSGGDVN AFFGIATMII 360
  361 AVPTGVKIFN WLFTMYKGKI IMRTPMLWVF AFFITFTIGG VTGVLMAIPP IDFQVHNSLF 420
  421 LVAHFHNVII GGVLFGFFAG LIYWFPKAFG FQLDERLGQW SFLFWVAGFY MAFMPLYLLG 480
  481 LMGVMRRLNH YADVTLQPYF IVAAIGAALI MIGILLQIAQ IIVSIKNRDK LRDKTGDIWN 540
  541 GRTFEWSVAS PAPFYNFAFI PKVEERDQYW EDKKKAKMEG RPLRVNPEHI QYKDIHMPRN 600
  601 TSAGFVIAMF AGVFGFAVVW HMWIPAIIGI VGVIATVIAR TFSKDIDYYV KAETVKQIEL 660
  661 QHYEESLT