YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29541615, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVDTAAAEH HHNADATDVF GFWLYIMTDC ILFASLFATF LVLHHPGAVG PPLKPLIDLP  60
   61 YVLVETFFLL ASNFTFCLAI FGINKNKLPA VIFWLILTFI LGAGFVVMEV MEFIHLNAEG 120
  121 YSWHVSGAAS AFFTLVGTHG FHVTMGLLWI LIMIIQLPIL KINKNTARRM VYLGLFWNFL 180
  181 DIVWIFLFTI VYLMGAVL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	43	0.93
Non-Cytoplasmic	44	60	0.89
Transmembrane Helix	61	83	0.91
Cytoplasmic	84	90	0.87
Transmembrane Helix	91	113	0.90
Non-Cytoplasmic	114	130	0.87
Transmembrane Helix	131	155	0.80
Cytoplasmic	156	172	0.80
Transmembrane Helix	173	194	0.93
Non-Cytoplasmic	195	198	0.76