YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYOE_COXBU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.95
Transmembrane Helix	28	48	0.94
Non-Cytoplasmic	49	53	0.78
Transmembrane Helix	54	74	0.94
Cytoplasmic	75	94	0.94
Transmembrane Helix	95	117	0.90
Non-Cytoplasmic	118	121	0.77
Transmembrane Helix	122	142	0.92
Cytoplasmic	143	149	0.87
Transmembrane Helix	150	169	0.95
Non-Cytoplasmic	170	175	0.83
Transmembrane Helix	176	196	0.95
Cytoplasmic	197	215	0.95
Transmembrane Helix	216	238	0.90
Non-Cytoplasmic	239	244	0.74
Transmembrane Helix	245	263	0.96
Cytoplasmic	264	279	0.86
Transmembrane Helix	280	300	0.92
Non-Cytoplasmic	301	305	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTRTEIVST TQTSATWRDY FQLCKPRVVL LMLLTAIVGM CLASPGIVSW RVFLFGNLGI  60
   61 ALAASSAAAI NHLLEHHLDK LMRRTYRRPI VQGKINRKNA AIFAAILCIL SMIILIAFVN 120
  121 LLTALLTFIT LIGYAGFYTL YLKHATPQNI VIGGLAGAAP PLLGWVAVTG HIDPPALILL 180
  181 LIIFLWTPPH FWALAIHRID DYAKANIPML PNTHGIIYTK INILLYTLLL TAISFLPFVI 240
  241 MTSGWIYFSS VCLLNLGFLY WAIRLLTSQR KEIPMRTFQY SIWYLMLLFT ALLVDHYVYL 300
  301 ALKLY