YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29541565, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKTDNLRIK AIHPLMLPAL LIEELPITAA VASTVNLARL AARDIIHGQD DRLLVVLGPC  60
   61 SIHDVKAALE YANRLKRCID RHAKELCIIM RVYFEKPRTT VGWKGLINDP QLDGSFHINQ 120
  121 GLRVARRLLL DINEIGVPTG SEFLDTIIPQ YISDLTSWSA IGARTTESQT HRELASGLSM 180
  181 PIGFKNGTTG NVQIAIDAVL AARQAHHFLG VSKQGIAAII ITKGNPDGHV ILRGSSQSTN 240
  241 YDPKSIEEAI LKLKANHLPP SVMVDCSHGN SRKNHKNQMR VVDALYDQIT QGSSYLLGAM 300
  301 IESNLVEGKQ TLESGKALTY GQSITDACIS WEDTELALEK LAQAVIIRRQ HSEERKHHGE 360
  361

Type	Start	End	Confidence
Signal Peptide	1	29	0.60
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	360	0.99