YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29541549, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEYATLRLI WWGIIGFLIS GFAIMDGFDL GAAGLLPFLG RTDTERRIIL NIMGPVWEGN  60
   61 QVWFILGGGV LLAAWPFLYA VAFSGFYFAM LLILLTLILR PAGFKYRSKI QNKAWRSIWD 120
  121 WVLCLAGIIA SFTFGVAVGN VIQGVPFYFT PELRSVYTGA FEALFNPFAL LCGLLALAMM 180
  181 MMQGSGFLSI KTEKELQHRA LIMARIMPLL VILLFAISSV WVIYGIKGYV VTSGINPAEF 240
  241 SNPLMKAVEV QKGAWLTNFI NYPILWLAPL LGFAGAFFEF VFIRRFPRLS FVGSSLSIFG 300
  301 IISTVGLAMF PFLLPSSSHP QSSLLVWDSS ASQLSLQIML IMILIFMPII LFYTTVVYRI 360
  361 LRGKVTAAYV ESNKDAY

Type	Start	End	Confidence
Cytoplasmic	1	8	0.60
Transmembrane Helix	9	30	0.87
Non-Cytoplasmic	31	72	0.60
Transmembrane Helix	73	99	0.85
Cytoplasmic	100	117	0.90
Transmembrane Helix	118	142	0.88
Non-Cytoplasmic	143	162	0.92
Transmembrane Helix	163	187	0.83
Cytoplasmic	188	201	0.90
Transmembrane Helix	202	225	0.87
Non-Cytoplasmic	226	262	0.95
Transmembrane Helix	263	283	0.94
Cytoplasmic	284	290	0.89
Transmembrane Helix	291	314	0.90
Non-Cytoplasmic	315	333	0.94
Transmembrane Helix	334	357	0.90
Cytoplasmic	358	377	0.97