YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29541548, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.95
Transmembrane Helix	18	43	0.83
Cytoplasmic	44	55	0.91
Transmembrane Helix	56	77	0.92
Non-Cytoplasmic	78	97	0.89
Transmembrane Helix	98	120	0.91
Cytoplasmic	121	128	0.90
Transmembrane Helix	129	149	0.95
Non-Cytoplasmic	150	186	0.94
Transmembrane Helix	187	210	0.90
Cytoplasmic	211	220	0.88
Transmembrane Helix	221	240	0.91
Non-Cytoplasmic	241	389	0.95
Transmembrane Helix	390	413	0.92
Cytoplasmic	414	422	0.88
Transmembrane Helix	423	445	0.92
Non-Cytoplasmic	446	467	0.90
Transmembrane Helix	468	490	0.84
Cytoplasmic	491	521	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGYETILLS RWQFAITAMY HFLFVPLTLG LSALLGIMET VYVMTGREIW KQMTKYWGIL  60
   61 FGINFAMGVA TGITMEFQFG TNWAYFSQYV GDVFGSPVAV EGLMAFFMEA TFVGLFFFGW 120
  121 ERLPKVGHLI VTWLVAIGSS FSALWILVAN AWMNHPVGAH FDFHTMRMEI SNFKALLFNP 180
  181 VAQAKFVHTI SAGYVMGAIF VLAISAFYLL RNRNVEFAKR SMTVAISFGL ASALSVVVLG 240
  241 DESGYVANQM QKMKIAAIEG MWETEPAPAS FNLFGIPIQS EHITRYRIQI PYILGLMATR 300
  301 SFHQVLPGIN ELVQQNKGRI QNGIKAYSAL TTLEKNPNNI VEQRLFKKYE NELGYGLLLK 360
  361 RFIDDPTKAT PAEIDKAAWL TVPANVAILF WAFRIMVGVG FFFIILFAIG FYFSTVRRFD 420
  421 RKWFLYLSLL SLPLPWIAVE LGWFVAEHGR QPWVVEGMLP TFLGTSTLTA GDLITSLAGF 480
  481 ALFYTALAVV EIYLMVKYIR LGPDGVAAQY SNPNKKAEST A