YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29654219, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSHLLSHLN WVDFAIIGII LFSIIISFFR GFVREAVSLV VWVAAIIVAI KFVEPVQIYL  60
   61 QTWIVSSSIR YAVAFISLFL SVFIIGIILN MLIHVLLKKT GLSITDRLLG IFFGAGRGFL 120
  121 IVAVLLLFVS IGSVEDGSLI AQSQLAPKFQ PIVSWLNQFL PSQFKQFSHW LADQPVSKVN 180
  181 NGDR

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.75
Transmembrane Helix	11	32	0.88
Cytoplasmic	33	38	0.66
Transmembrane Helix	39	58	0.87
Non-Cytoplasmic	59	70	0.76
Transmembrane Helix	71	93	0.91
Cytoplasmic	94	108	0.75
Transmembrane Helix	109	132	0.88
Non-Cytoplasmic	133	184	0.86